I'm not sure if this is exactly related, but didn't want to start a new thread if it was...
I've been having trouble with the reinforcements spawning really far from the actual territory target. I completed taking the Diamond City territory a couple days ago. The initial group was right by the Fens Street Sewer, where the flag is located. The next wave spawned by Hubris Comics. I hunted them down, then returned to the flag. The notice said that reinforcements were coming, but nothing. I waited on the convenient bench for an hour, and a couple would show, but not a full force. Eventually, another force arrived at Hubris. This repeated about three or four times.
The extra crap part of that is, that when the attack is successful, you are flown back to the flag. This brought be directly through the load area for Diamond City, completely wrecking the quest closure. I reloaded several times, trying coc commands, and finally finished by sprinting back to the flag before the last gunner was downed, and then waiting on the bench until they teleported to me.
This happened again when taking the Fairline Hill Estates territory. The enemies would spawn way south of GNN (pictured below), and I'd have to hunt them down. The brutal part, as was mentioned in this thread, is that they seem to teleport around. So, I would start heading toward their spawn, and they'd teleport to the flag or somewhere else. It takes a long time, but the territory can be won.