Sorry I don't know how to spoiler tag this list so that it doesn't take up a huge chunk of the page!
Here is my installed modlist (wabbajack load order). It might also be worth nothing that Preston Garvey is having trouble with completing a dialogue sequence as well, though that might be completely unrelated.. It is based on F4EE guide list with a few more things included. I have used coc command line a couple of times in the game so far when I couldn't be bothered walking across the map (playing on survival difficulty).
-edit also I just noticed that I can reply to Jammer after his last line but Nate will just repeat the skip "uh-huh", "Mhmm", etc line. Making me think the dialogue is stuck somewhere.
#Mod_Name
"DLC: Wasteland Workshop"
"DLC: Vault-Tec Workshop"
"DLC: Nuka-World"
"DLC: Far Harbor"
"DLC: Contraptions Workshop"
"DLC: Automatron"
"Unofficial Fallout 4 Patch"
"Cubemap Fix (By BiRaitBec)"
"F4SE"
"Armor and Weapon Keywords Community Resource (AWKCR)"
"Armorsmith Extended"
"VIS-G Item Sorting"
"Day Night Cycle - Longer Days Shorter Nights (and Longer Nights)"
"Visual Mods_separator"
"MystiriousDawn's HD Lensflare"
"Proto Vault Suit"
"Immersive Wasteland Grass"
"True Storms Wasteland Edition v1.4"
"True Nights (for True Storms with EN
"
"Interiors Enhanced - Darker Ambient Light and Fog"
"Fr4nsson's Light Tweaks"
"Fallout 4 Enhanced Color Correction"
"Laser Bolt FX Fallout 4 Edition"
"Pip-Boy Flashlight"
"WET"
"Eyewear and mask retexture"
"No More Fake Puddles"
"Live Action Mr. Handy"
"Wetness Shader Fix"
"Audio Mods_separator"
"Reverb and Ambiance Overhaul"
"Reverb and Ambiance Overhaul - True Storms Patch"
"LOST Audio Tweaks"
"Cinematic Sounds - Explosions"
"Commonwealth Gunfire Overhaul"
"Project Reality Footsteps FO4"
"P.A.M.S - Power Armor Movement Sounds"
"Terrifyer - Ghouls"
"Quieter Settlements"
"Splendor Music Mod"
"General Fixes QoL_separator"
"3rd Person Beard Fix"
"Achievements"
"Remove Fallout 4 Updates From Main Menu"
"Crafting Highlight Fix"
"Faster Workshop (Workshop Lag Fix)"
"Fixed Alpha Maps"
"Companion Stealth Distance Fix (No Free Hugs)"
"Companion Command and Tactics"
"RAW INPUT - The Ultimate Mouse Sensitivity Fix"
"Weapon Rack Extended (WRE)"
"Nuka-World Bottle Scenery Fix"
"Disable NPC Comments When Waiting for Player Input"
"Alex's Male First Person Camera Height Fix"
"Laser weapons 1st person reposition"
"Clock Widget"
"Power Armor map fix"
"Place Everywhere"
"Keep Radiants in the Commonwealth"
"Grab the Damn Mag"
"Automatically Lowered Weapons"
"Sleep Or Save"
"Game Configuration Menu"
"GCM DLC Automatron ( ESL File )"
"GCM DLC Far Harbor"
"Realistic Death Physics - No Animations"
"Realistic Conversations Fallout 4"
"Uncapped Settlement Surplus"
"No More Leaping Ghouls"
"Unlimited Fusion Core Power"
"HUD UI_separator"
"Extended Dialogue Interface"
"Fallout 4 Wheel Menu"
"Immersive HUD - iHUD"
"HUDFramework"
"Mod Configuration Menu"
"PipboyTabs"
"Silent UI"
"Settlement Menu Manager"
"Improved Map with Visible Roads"
"Small Map Markers"
"Power Armor HoloHUD"
"Character Enhancements_separator"
"Caliente's Beautiful Bodies Enhancer -CBBE-"
"BodySlide and Outfit Studio"
"LooksMenu"
"Looks Menu Customization Compendium"
"LooksMenu Body Tattoos (CBBE) (EVB or vanilla)"
"FSM Body Textures 5.0 - Base"
"More Hairstyles"
"Lots More Facial Hair"
"Lots More Female Hairstyles"
"Lots More Male Hairstyles"
"Ponytail Hairstyles by Azar v2.5a"
"Commonwealth Cuts - KS Hairdos - ApachiiSkyHair"
"KS Hairdos - Addon(s) with Physics"
"Wasteland Salon - Hair Texture Improvement Mod"
"Black Desert Online Hairs"
"MeanMachineEyes ( Standalone )"
"Ghastly - Ghoul Eyes Texture"
"Immersive Mouth and Teeth - 6.0"
"The Eyes of Beauty Fallout Kaleidoscope Edition - All-in-One"
"Picturesque Presets for LooksMenu"
"True Wasteland Body for CBBE"
"NPC Retexture Merged - CtGW"
"Weapons_separator"
"See-Through-Scopes"
"Crossbows of the Commonwealth"
"CROSS_Blades"
"CROSS_Cryolance"
"10mm SMG"
"OTs-33 Pernach - Pistol"
"WWII Colt M1911A1 of Freedom"
"Hunting Revolver and Ranger Sequoia"
"DefenseGun"
"Grease Gun SMG"
"Wasteland Melody's Chinese Assault Rifle"
"Chinese Assault Rifle Animations"
"Service Rifle"
"Steyr AUG"
"HK G11 K2 - Kraut Space Magic"
"M60 Light Machinegun"
"Anti Materiel Rifle"
"The Pipe Shotgun"
"Chiappa Triple Threat - Triple Barrel Shotgun"
"YK42B - Pulse Rifle"
"Wattz Laser Gun"
"COBRA - Officer's Revolver"
"Winchester P94"
"Viking Battle Axe"
"Slaughtering Buzz Axe"
"Classic Super Sledge"
"Caravan Shotgun"
"AQUILA - Laser Rifle"
"DOOMBASED Weapons Merged (Weapon Pack)"
"Weapon Jiggle Remover"
"Armor_separator"
"Clothing Of The Commonwealth - CBBE"
"Eli's Armour Compendium - CBBE"
"Modular Road Leathers"
"Shade Girl Leather Outfits - CBBE"
"SGLO Bodyslide Hotfixes-32547-1-0"
"Raider Themed Mashups"
"Raider Mashup Quick plugin fix-29503-1-11"
"Badlands Mashups (CBBE-Vanilla)"
"Commonwealth Mashups (CBBE-Vanilla)"
"Wasteland Mashups (CBBE-Vanilla)"
"Irradiated Raiments (CBBE-Vanilla)"
"Irradiated Raiments Boston Belle Belt Hotfix (CBBE)-34193-1-0"
"Merc Outfit Pack"
"Capital Wasteland Outfit Pack"
"Spiff's Wasteland Clothing Pack"
"Crimsomrider's Accessories (AWKCR-AE)"
"CROSS Pre-War Cybernetics"
"CROSS_BrotherhoodRecon"
"CROSS_Courser Strigidae"
"CROSS_InstituteExpeditionarySuit"
"TheKite's Handmaiden"
"InstitutePowerArmor"
"m150's Institute Power Armor HD Retexture"
"Enclave X-02 Power Armor"
"X-02 Power Armor - All Factions Paintjob"
"Hellfire X-03 Power Armor"
"X-03 Power Armor - All Factions Paintjob"
"Hellfire X-03 Power Armor Camouflage Retexture - StandAlone"
"FO4 War Tags"
"Tribal Power Armour"
"West Tek Tactical Optics"
"Improved Jetpack Flight Model"
"Restore Power Armor Frames"
"Horizon Patches_separator"
"Raider Overhaul WIP"
"AE Replacer Raider Overhaul v11.4c v4"
"D.E.C.A.Y - Better Ghouls"
"Deadlier Deathclaws"
"Unique NPCs - Creatures and Monsters"
"UniqueNPCs-CreaturesMonsters 2 1 AE VIS-G Patch"
"UniqueNPCs-CreatureMonsters 2 1 Hotfix"
"Super Mutant Redux 2.0"
"We Are The Minutemen"
"Far West Minutemen"
"Militarized Minutemen"
"Synth Overhaul - By Maaro and Echoes"
"Synth Overhaul - Update"
"AE VIS-G Replacer Synth Overhaul v3.0.4"
"Better Settlers"
"Unique NPCs - An Overhaul of the Commonwealth"
"Unique NPCs - Hotfix"
"Settlements_separator"
"Homemaker - Expanded Settlements"
"Sim Settlements"
"Sim Settlements Mega Pack - Year One"
"Sim Settlements Mega Pack - Year Two"
"Sim Settlements - Conqueror"
"Wasteland Venturers 2 - Sim Settlements Addon Pack"
"Sim Settlements - Ruined Homes and Gardens Add-on"
"Sim Settlements - City Plan Pack - Contest Entries"
"Sim Settlements Building Plans Preview Newest v2.0"
"Workshop Framework"
"Workshop Plus"
"Sim Settlements - IDEK's Logistics Station"
"Manufacturing Extended"
"Icebreaker - Settlements - Settler Dialogue Overhaul"
"New Locations_separator"
"Tales from the Commonwealth"
"Settlers of the Commonwealth"
"Lola Dress CBBE"
"NPCs Travel"
"Inside Jobs - Commonwealth Interiors Add-On"
"Goodneighbor Expanded"
"Immersive Gunners Plaza"
"Immersive Covenant Compound"
"Immersive Beantown Brewery"
"Immersive Vault 95"
"Immersive Hub City Auto Wreckers"
"Immersive and Extended Lexington"
"South of The Sea"
"The Beantown Interiors Project"
"Spring Cleaning Compatibility Patch"
"Doc Drumlin by SKK"
"Gameplay_separator"
"Campsite - Simple Wasteland Camping (and HD Sleeping Bags)"
"VAFS Redux"
"Realistic Bullets 1.3.3"
"Live Dismemberment"
"Better Locational Damage"
"Military MREs"
"Deployable Turret Pack 2"
"Moddable Robot Settlers Compilation"
"Tougher Cars Durable Vehicles"
"Advanced AI Tweaks"
"Roleplay Enhancements_separator"
"Deeper Thoughts - Curie"
"Silent Protagonist"
"Silent Protagonist Voice Patches"
"First Person Messages"
"Quest Summary by Default"
"The Danse Dilemma"
"Heather Casdin"
"HORIZON_separator"
"Unbogus Fallout Overhaul"
"Unbogus Fallout 2.Final VIS Patch"
"Shaikujin's Better warning for settlements being attacked"
"QuickTrade"
"Auto Eat and Drink in Survival 1.3.1"
"Salvage robot parts"
"Sofa Surfer - Sleeping on Couches"
"Ellen - the cartographer"
"Buttons - Companion"
"Buttons Companion - ESP fix"
"I'm Darlene"
"The Machine And Her"
"New Alternative Animations"
"Stay Focused Son"
"Power Armor Animation Changes"
"Better Companions - All In One"
"AmazingFollowerTweaks"
"AmazingFollowerTweaks XDI FIX"
"Load After Horizon_separator"
"Yatz UI Presets for DEF_HUD (YUP)"
"No Radiation"
"No Radiation Far Harbor"
"PlayerUndead death recovery by SKK"
"Survival Mode Console Enabler"
"Disable Headbob"
"Unlimited Sprint"
"Killable Children"
"Sim Settlements Conqueror Faction - Wastelanders"
"Sim Settlements Conqueror Brotherhood of Steel Faction Pack"