I am getting an incomplete scrapping. I am creating a "blank canvas" for sanctuary. I exported Sanctuary after completing 'Out of Time'. I then used Scrap everything to remove all the unwanted items and exported the settlement again. I then used the 'Settlement Layout Plugin Creator' where the WSFW Export file is the empty export, the Scrap Profile Untouched Settlement is the original export, and the Scrap Profile fully scrapped settlement is the empty export again. Once I had the .esp file, I loaded my game just after the 'Out of time' quest, and then tried to run the new file. It removed most things, but some stuff got left behind.
I have attached the export logs.
I have attached the export logs.