I'm having a similar problem, I attempted to clean all 4 quadrants, 3 of them cleaned and spawned room controllers, the 4th did not clean, did not spawn a room controller and the options to clean are gone. Unfortunately I failed to notice that before ~20 hours passed in my save.
All other projects, upgrades, and repairs are done at the HQ, this section is the only one that is glitched. Any console commands or the like that might reset segments of HQ would be appreciated.
I selected Robotics Lab when I originally zoned it, however it still displays the default room title in HQ layout.